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Due to lack of time-dependent evolutionary information of the steady impinging jet model, a transient impinging jet model was studied to capture the transient features which were then compared with those of the cooling-source model by performing numerical simulations.
These data allowed us to test the hypothesis of time-dependent evolutionary rates and the assumption of strict maternal mitochondrial transmission, and to investigate the role of mitochondrial mutations in determining phenotype.
Nevertheless, an approximate clock can be established for a locus with many independent calibrations [ 4], and would be useful for roughly dating lineages and testing time-dependent evolutionary hypotheses.
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Moreover, as was recognized by Arvestad et al. [ 19, 20], explicit time modeling facilitates integration of separate time dependent evolutionary models into a unified framework.
Höhna, S. The time-dependent reconstructed evolutionary process with a key-role for mass-extinction events.
Hence, it would be interesting to examine the time-dependent pattern of evolutionary rates in genes, under various magnitudes of selection pressure.
Based on the similarity of neutral evolutionary rates, Soares et al. (2009) devised a method to correct the time-dependent effect in estimating evolutionary rates using human mitochondrial genomes.
Summary of the results from the examination of the effect of the time-dependent rate phenomenon on evolutionary timescale inference.
Furthermore, none of the presented software are able to: (1) Define a determined OSS for a given time including the time-dependent phenomena effects and the evolutionary erection of the superstructure.
However, the substitution rate estimates for the tip branches leading to the individual subspecies are very similar to the overall estimate for the branch from the MRCA of all rodents to the tips of the beaver branches, suggesting that for this evolutionary lineage, time-dependent variation in substitution rates is negligible.
Because some of the mutations detected by PFGE or MLVA might not be selectively neutral, we might have observed time-dependent mutations that are transient on evolutionary time scales and will frequently be eliminated by selection pressure acting on them (27 ).
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