SOAP maps short probes from whole genome tiling arrays onto large databases of genomic DNA sequence more quickly than BLAST, but has a tradeoff of accuracy for speed.
Multi-band wavelets have attracted considerable attention due to their richer parameter space to have a more flexible time-frequency tiling, to zoom in onto narrow band high frequency components in frequency responses, to give better energy compaction than 2-band wavelets.
From the 5th-round DNA library of the IVV screening in the presence and absence of a bait Jun protein, called bait and bait screening, respectively [21], we obtained labeled RNAs and hybridized them onto the tiling array.
Fluorescently-labelled DNA samples were prepared from unamplified input/ChIP/FAIRE DNAs and hybridized onto the ENCODE PCR product tiling array for 45 hours using an automated hybridization station (HS 4800™, TECAN) as described elsewhere [4].
The identified clones were superimposed onto the assembled minimal tiling paths and the size of the genes was calculated from the sizes of the individual overlapping clones.
Tiling divides the image into overlapping tiles.
The immunoprecipitation (IP) DNA and mock-IP DNA were hybridized onto high-resolution whole-genome tiling microarrays, which contained a total of 371,034 oligonucleotides with 50-bp probes overlapping by 25 bp on both forward and reverse strands.
We first map all tracks of data onto a common coordinate represented by tiling probes.
Combined DNA samples were loaded onto Nimblegen D.mel ChIP 2.1 M tiling arrays (GEO platform GPL15057), hybridized overnight at 42°C, then washed and scanned in an Axon GenePIX scanner the following day.
BAC pools representing the minimal tiling path (MTP) of wheat chromosome 3B were hybridised onto barley expression microarrays to identify the location of genes along the wheat 3B physical map.
