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To investigate sex-specific heterogeneity throughout each linkage group, common marker pairs were used to compare the locus intervals across the male-specific map and female-specific map using contingency G-test.
By comparing the map positions in Table S3 (Additional File 13) one can see that there is perfect co linearity of shared marker order between the two maps, though there are differences in map distances throughout each linkage group.
Mild to strong localised sex-specific recombination patterns were prevalent over 11 linkage groups (LG1-LG8, LG10-LG11 & LG13) as illustrated by plots of the sex-average, female and male cumulative cM throughout each linkage group and the regression analysis of standardised sex-specific interval sizes.
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Chromosome numbers are indicated above each linkage map.
The linkage group numbers, length of each linkage group and number of loci mapped on the linkage group are indicated on top.
We assessed the distribution of genetic diversity along each linkage group by using a panel of 52 accessions that was composed mostly of L. sativa cultivars encompassing diversity in each of the cultivated types of lettuce (Table S1) (Stoffel et al. 2012) and 10,243 unigenes distributed throughout the nine linkage groups.
occurring on each linkage group.
Sex-average and sex-specific linkage genetic distances were estimated for each linkage group.
The distribution of loci was different for each linkage group.
Each linkage group contained between 24 and 193 SNPs.
Three-round mapping was performed for each linkage group.
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