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For mass spectrometry analysis, the flow through containing the N-terminal cleavage product was concentrated to 200 µL and precipitated at −20°C with 1 mL of 10% Trichloroacetic acid (TCA) in acetone.
After centrifugation to pellet the aggregates the supernatant containing S-HDL-SAA fraction was applied to the column pre-equibrated with 25 mM sodium acetate, 125 mM NaCl, pH 5.2 and the flow through containing the S-HDL-SAA was collected with heparin remaining bound to the column.
The flow through containing the glycopeptides were collected by centrifugation and purified by C-18 chromatography.
The re-loading was performed at 4°C overnight with gentle shaking, and then the flow through containing the released Rv0011c was collected and analyzed by SDS-PAGE.
If necessary, use your hands to pull back on the rear derailleur (the "arm" that the chain passes through containing the small pulleys) and/or maneuver the chain out of the way as you remove the wheel.
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The cleaved protein was purified from the protease and the cleaved affinity tag by passing the cleavage product over the nickel-affinity column and collecting the column flow-through containing the purified protein.
The flow-through containing the TEV-treated protein was collected.
The flow-through containing the protein was pooled and applied to a Hitrap SP column equilibrated with the same buffer.
The flow-through containing the protein was pooled and applied to a Hitrap Heparin and SP column (Amersham Biosciences) equilibrated with the same buffer.
The flow-through, containing the native enzyme, was concentrated and diluted in ESB as described above and the proteins were analysed by SDS-PAGE.
Protein solutions were reapplied to a HiTrap Ni2+ FastFlow column (5 mL) (G.E. Healthcare, QC, Canada), and the flow-through, containing the cleaved IC3 or IC3-C58 proteins, was collected.
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