Sentence examples for threshold alignment from inspiring English sources

A threshold alignment score of E-10 was used to filter the results, and only the alignments of at least 100 bp and with a minimum of 95% of identity between the sequences were retained.

For each of those read pairs, the mapped end must be uniquely located in the genome with no mismatch bases while the other end cannot be mapped to anywhere in the genome under a given threshold alignment score (s=20 for ∼36 bp reads).

Alignment candidate threshold (minimal alignment length to map the read) was optimized with hash size 20.

In order to minimize the mining of technical errors we defined a stringent threshold for alignment quality (expect≤1E-21) and the low quality ends of alignments were discarded.

Our goal was to find a threshold for alignment confidence that would allow no more than 1% misalignments to remain in our subset of composite reads (based on previous experience with de novo assembly of libraries containing hybrid reads).

The significance of the threading was determined on the family basis: if over 75% of the members in a family give the threading scores above threshold, the alignment between the sequence and the template structures from the family was considered significant.

Sequence identity threshold and alignment coverage (for the shorter sequence) were both set at 80% to generate clusters.

In another study, 100 nm depth was determined as a threshold for alignment of cardiomyocytes [ 21], osteoblast-like cells [ 16, 22], and hepatoblastoma cells [ 23].

Scaffolds with BLAST hits matching ≤30 regions and >30 regions of the Tc or Dp reference genomes were designated as "low-copy number" (LCN) and " HCN" repeats, respectively (dc-megablast, E-value threshold 1e-9, alignment >150 bp).

Amino acid sequences with e-value threshold ≤1e−5, alignment length over 70% of its own length and over 50% match identity were selected and assigned as the annotation of predicted genes.

The ≥400 bp threshold for alignments was introduced to ensure that fragment recruitment is based on nucleotide homology of at least half of an average-length microbial gene.