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When we compare both models, the reflexion model is created in which three types of relations between the models are revealed: convergence, divergence, and absence.
Following the typology introduced by Grossi et al. [13], we can distinguish three types of relations: power which corresponds to task delegation; coordination which represents flow of information among actors; control relation between actors: actor A controls actor B if A monitors agent B activities.
The term "metabolic network" is overloaded as it encompasses at least three types of relations.
In our study, gene conservation in yeast and human can be summarized in three types of relations.
With the term 'multi-layer network' we define a graph including two types of nodes (mRNAs and miRNAs) and three types of relations (mRNA-mRNA, miRNA-mRNA and miRNA-miRNA).
The proposed integromics network approach combines the transcriptome, proteome and micronome information in the form of a composite graph, upon which a module-detecting algorithm will define multi-layer modules with two types of nodes (mRNAs and miRNAs) and three types of relations (mRNA-mRNA, miRNA-mRNA, miRNA-miRNA).
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There are three types of relation ship between the nodes in this algorithm.
Relational processes construe the experiences of being and relate one fragment of experience to another through attribution (e.g., 'I'm okay') or identification (e.g., 'I'm that odd person') and are divided into three types of relation: intensive, possessive, and circumstantial.
Specifically, we create four binary features that encode whether argument e2 is related to predicate e1 through the four types of relations, and another four binary features that encode whether argument e1 is related to predicate e2 through the four types of relations.
Two types of relations are divided.
The weights of the six types of relations are initialized as 1.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com