The best ancestry estimates were obtained by using the cross-validation option implemented by ADMIXTURE.
We analyzed the data with the random-tree option implemented in PAUP 4.0b10 [ 26].
Note that case S(1) is the only option implemented in [ 36].
Multiple sequence alignments and pairwise sequence comparisons were performed with the ClustalW option implemented in MEGA 5.05 [ 39].
Linkage disequilibrium (LD) calculations between polymorphisms were carried out using the LD option implemented in TASSEL v.2.1 [ 30].
In this study, interviewees reported a clearly defined decision-making process where evidence is weighed and the most appropriate option implemented.
A distance analysis using the neighbor-joining method (NJ) was done using a close-neighbor-interchange (CNI) option implemented in MEGA (version 4.0 [ 28]).
In Ditrame Plus, the allocation to an infant-feeding group (formula-fed or short-term breastfed) was based on the actual feeding option implemented two days after birth.
QTL and their environmental interaction effects for all the traits were first found by the mixed model−based QTL mapping approach using a single trait and multienvironment option implemented in Genstat 12.1 (Payne et al. 2009).
These sequences were used as queries in the BlastP search option implemented at the FGDB server (see above) to retrieve putative homologs from the F. graminearum proteome (see Additional file 2).
