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This large divergence is further underlined by the respective gene context of both copies of cheC.
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This result suggests that the large divergence is specific to the CYP2D nonconverted region.
This result is consistent with the large divergence time and the absence of migration between lineages recovered by two independent analyses (see below).
Simulations in EVOLVER revealed that this low level of concordance was indeed expected given the method's low power and the large divergence among SRK sequences.
A transcriptome-based cladogram supports the large divergence between A. mexicanus and A. picadoi, and a closer kinship between A. mexicanus and C. godmani.
While the large divergence between these species may obscure relationships between protein sequences, making inference of orthology problematic [ 48- 50], the parameters used were most inclusive [ 50- 52].
Interestingly, we identified more than 10,000 noncoding conservations from the genome of frog (X. tropicalis) in spite of the large divergence from mammals.
Finally, the large divergence of co-expression relationships between genes in Carpaccio and Soligo were highlighted (clusters 2, 13, 14 and 16, totalling about 600 genes).
The close GC content values between the L. drancourtii and P. acanthamoebae species and the large divergence in the GC content among genes prevent us from confirming gene exchanges between these two partners by this method.
Due to the large divergences between EFL and the other genes, Gblocks was run to remove ambiguously aligned regions [ 35].
This experiment shows the largest divergence between the simulations and the real-world experiments, and shows the most interesting effects.
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