Sentence examples for this initial alignment from inspiring English sources

Amino acids were aligned with ClustalW [18] and this initial alignment edited manually in MacClade 4.08 (included as supporting File S1) [19].

First, a random window position is selected for each input Logo and the cumulative information of the aligned windows is calculated for this initial alignment.

This initial alignment was refined manually (as described in Methods) to remove redundant sequences.

This initial alignment was adjusted manually in BioEdit v.7.0.5.3 or Geneious Pro v.5.6 to minimize steps in the most parsimonious trees (e.g. Koch et al. 2010).

To adjust this initial alignment, PISwap uses the intuition that biologically conserved interactions can compensate for mapping proteins whose sequences are not particularly similar to one another.

This initial alignment allowed for identification and removal of classes lacking any identifiable features (generally false positive particle picks) or clearly identifiable as a non-ribosomal E. coli complex.

If there are base mismatches or indels in the initial alignment of this overlap region to either reference location, then each reference alignment is trimmed back until it consists of only perfect matches to the reference genome in the overlap region.

In this region, the deposition rate is high and the initial alignment of the fibrils on the surface probably determines the final morphology.

In this instance, NanoOK takes the highest scoring alignment and merges this with any alignments for the same reference that map close to the initial alignment.

To exclude these situations, only alignments with unambiguously aligned blocks selected by Gblocks comprising 75% or more of the initial alignment were studied.

Generally, the initial alignment is divided into coarse and fine alignment.