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The comparison of all metagenomic sequences with the European Database allowed the selection of 6,099 sequences presenting some 16S rRNA gene similarity, this dataset was submitted to automatic annotation using the RDP Classifier.
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The extracted dataset was submitted to the same filtering as were the GBS data, notably to remove markers that became monomorphic within each panel.
The generated dataset was submitted to the National Center for Biotechnology Information (NCBI) Gene Expression Omnibus (GEO; http://www.ncbi.nlm.nih.gov/projects/geo/) database (GSE 13271).
The Affymetrix dataset was submitted to the Gene Expression Omnibus database, GSE8882.
The dataset was submitted to the National Center for Biotechnology Information's Gene Expression Omnibus database [GEO GSE11972].
The full dataset was submitted to Gene Expression Omnibus (GEO) under submission number GSE9589.
The final combined dataset was submitted to Morphobank [ 121]; Genbank numbers for published DNA sequence data are recorded in this archived matrix.
A routinely collected minimum dataset was submitted with each sample, and further exposure data were collected for each patient from the local Consultant in Communicable Disease Control.
We hasten to note that the entire dataset was submitted to the NCBI, but we also acknowledge that a table included in the paper will be far more useful.
The full dataset is submitted to Gene Expression Omnibus under submission number series, GSE9589.
The full microarray dataset is submitted to NCBI's Gene Expression Omnibus (GEO) repository with series accession number GSE68792.
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