Sentence examples for this alignment retains from inspiring English sources

This alignment retains these designations today except that PA 154 has been removed between Laporte and Coles Creek.

Moreover, the resulting alignment retains biological knowledge that was incorporated into the existing alignment.

For each region with an alignment retained, the first intron of the closest gene was selected as a control region.

Maximum likelihood analysis using traditional primary sequence alignment retained one tree with the assumed model (TVMef+G) selected by AIC.

Bayesian analysis of the same alignment retained the same topology and supported the same branches (data not shown).

For representation of the Arabidopsis proteome, contigs were searched against A. thaliana proteome (TAIR9; [ 41]) with an E-value cutoff criterion of 1e-5 and the best alignment retained.

For each biological dataset, Liu et al., 2010 provided a reference tree, computed using RAxML v. 7.0.4, on the curated alignment, retaining only branches with bootstrap support of 75% or greater (Hillis and Bull, 1993).

Yet, the alignment of the 3' IR of these Chr12 PSA genes is quite mosaic, showing large blocks of deletions/insertions. Phylogenetic analysis of an alignment retaining 1.2 kb of domains conserved in at least 70% of the genes revealed that Chr12 genes cluster according to the species (not shown).

We then filtered the alignments, retaining only those alignments with 95% identity or better across 90% of the query length.

Had this not been done, the ratios for the methods with higher fraction of alignments retaining Poly A) tails would have gone up.

The only alignments retained were those that both consisted of paired sequencing reads and had a mapping quality greater than 20.