Sentence examples for this alignment including from inspiring English sources

We excluded the most divergent sequences from this alignment, including those from sponges that lack the Irx specific domains.

One included 47 representatives from the broadest diversity of sequences available; this alignment including a partial sequence from Cyanophora (regions A-G).

Phylogenetic analysis was carried out using this alignment including all Su var)3-9 partsin parts except the common region with eIF2γ and the region 2 (Fig. 2) [see Additional file 2] and implementing BI, ML, MP and weighbor methods (see Materials and Methods).

This alignment included 25 dinoflagellate taxa, with 1,229 unambiguously aligned bases (Additional file 2).

This alignment includes 71 B. schlosseri sequences and the three best outgroup sequences belonging to Botrylloides leachii and Botrylloides nigrum.

A Bayesian phylogenetic tree produced from this alignment included four sub-clades each containing one of the four functionally characterized latrotoxins from L. tredecimguttatus, together with conserved orthologs assembled from our L. hesperus short-read data.

This alignment includes the genomes of human (Homo sapiens, version NCBI 36.1, March 2006), chimpanzee (Pan troglodytes, version PanTro 2, March 2006), and rhesus monkey (Macaca mulatta, Baylor College of Medicine Human Genome Sequencing Center, version v.1.0 Mmul_051212, January 2006).

Cand9 also had a structural alignment to the RFAM family RF00708, but this alignment included only 12 bases of the original read, and in spite of the fact that the family has been characterized in human, the alignment did not cover the whole consensus sequence.

Thus, whereas there are in principle 24 possible propositions between the Xenopus and zebrafish ontologies based on 'somite', only 13 were considered in this very thorough alignment (including the validated pair XAO 0000058 'somite' ZFA 0000155 'somite'somite

In total, 13 positions in the alignment included gaps (Additional file 2: Figure S2).

Each aligned read was then consolidated into a single genomic alignment, including intronic splice gaps.