Sentence examples for this alignment for from inspiring English sources

Inferred amino acid sequences for each data set were aligned using MUSCLE [ 95] and the coding DNA sequences were then forced onto this alignment for phylogenetic analysis.

A 201-bp sequence window comprising the editing sites matK-2 and matK-3 was extracted from this alignment for analysis.

To further explore the evolutionary affinities of the PafA family we prepared a multiple alignment and used an HMM derived from this alignment for an HHpred profile-profile comparison search against a library of HMMs derived from non-redundant PDB structures as seeds.

To find the confidence interval around the test tree, the procedure was repeated but this time the alignment for the test tree was used when getting the log likelihoods.

This alignment looks for inversions by attempting to align the query gap sequence to the genomic region bounded by the genomic alignment coordinates of the bases flanking the gap in the original contig-to-genome alignment.

However, we confirmed this alignment only for regions around TSSs derived from broad promoters, not for those around TSSs derived from peak promoters.

This alignment strategy for finding drug targets is reasonable.

A search is then carried out over this alignment graph for high scoring sub-graphs.

In the current model, theta bursts could still signal syllable boundaries when speech was compressed by a factor 2 and this alignment deteriorated for higher compression factors.

But beyond this infrastructure alignment for integrative health care was less supported.

Following the alignment of the vertebrate TAARs, we manually removed long overhangs introduced by the out-groups and used this trimmed alignment for the phylogenetic analysis (File S2).