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These estimates obtained by the present model that incorporates the shading effects of panicles and stems on DCP were higher than the previous reports which did not consider the effects of shading by panicles and stems.
Therefore, one can average over all these estimates (obtained column wise) to obtain more refined estimates for the unknown DOAs as follows: begin{array}rcl@hat{theta}_{k}^{text{column}} = &&frac{2}{(N_{a}-2K-1)(N_{a}-2K)} sumlimits_{l=1}^{N_{a}-2K-1}~sumlimits_{p=0}^{N_{a}-l-2K-1}hat{theta}_{k}^{ l,p)}.
These estimates, obtained prior to the introduction of HPV vaccination, provide a baseline for monitoring and surveillance of the effectiveness of this primary prophylactic intervention in vaccinated and unvaccinated adolescents.
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These alignments are the estimates obtained from Clustal W [ 37], Muscle [ 38], and BAli-Phy [ 24].
These results corroborate the estimates obtained with the previous approach for the current effective size and the time of the bottleneck.
Parameter ranges for uniform priors were chosen on the basis of the highest posterior density intervals (at 90%) of the estimates obtained in these initial runs.
Further follow-up of the BWHHS is required in order to increase numbers of events and thus increase the precision of the estimates obtained in these analyses.
The grey "shadows" within the bar graphs in Figure 2, Figure 3 and Additional file 6: Figure S5 indicate the estimates obtained from these location randomized analyses.
Discrepancies between these and estimates obtained under a no-interactions assumption would prompt more closely studying the original contributing path-specific effects.
Using Spearman's rho we compared these measures to estimates obtained using only the homes' street addresses and recent and/or historical measures from publicly monitored water sources within specified distances (radii) ranging from one half mile to 10 miles.
However, these small discrepancies between estimates obtained under different substitution models are almost negligible as compared with the large differences in estimates between the auto-correlated and uncorrelated models of rate change.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com