These cross-references and alternate-database classifications are routinely provided as ClassyFire output, when available.
Based on these cross-references, we extracted gene pairs defined as genes encoding for proteins that can catalyze two reactions in the same pathway.
Establishing and maintaining these cross-references is the result of a collaborative effort with the scientific community, and contact with resource developers is maintained to ensure access to reliable and comprehensive data.
Interestingly, many of these cross-references (/db_xref) are specific to the curated database: for instance, RefSeq has/db_xref to Entrez [ 7] and often to CDD [ 8], whereas Genome Reviews has/db_xref to Gene Ontology [ 9], InterPro [ 10], and UniProt [ 11], and occasionally to HOGENOM [ 12], and PDB [ 13].
Add these cross-reference categories in the following format: Add these cross-reference categories in the following format: Keep an eye on updating category cross-referencing.
You could for example tag this bundle o Ford o Mustang o 1967 o Fastbacks o Hot Cars * Having these tags will make it show up in searches used for these and also cross reference with other bundles sharing the same tag.
For metabolites, these annotations constitute a cross reference to a chemical or a metabolic pathway database.
These are cross referenced to publicly available data like addresses held by the city and new construction of neighborhoods or roadways that comes from city planning departments.
In addition to the classification of each sequence (by class and subunit), additional attributes are listed, which enables retrieval of proteins with solved structures, experimentally derived mutational data (including the corresponding PubMed references), and presence of intervening self-splicing sequences, i.e. group I and II introns and inteins; these are cross referenced when applicable.
Of these, on cross referencing with the published literature, revealed that BRCA2, CD30, CD40L, CST3 and PENK are known to be involved in human CD30hi lymphomas [ 17, 51, 73- 79] and, except for CD30, all had decreased expression in CD30hi cells.
Cross reference: "The Therapeutic Alliance: The Essential Ingredient for Psychology".
