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In all D. vulgaris Hildenborough EBPs but one, there are annotated Fis-type HTH motifs (Additional file 2), which are typical for σ-dependent regulators [ 19].
For each PSG gene, there are annotated RefSeq resources comprising information on genomic structure, transcripts and translation products.
To test this notion, I examined if there are annotated ncRNA loci within 20 kb of the 1827 SRF intergenic binding sites.
At present, there are annotated mt genomes from 165 fungal species (http://www.ncbi.nlm.nih.gov/genomes/GenomesGroup.cgi opt=organelle&taxid=4751&sort=Genome).nih.gov/genomes/GenomesGroup.cgi opt=organelle&taxid=4751&sort=Genome
If there are annotated source (src) corpora whose event types and possible arguments match those in the target (tgt) corpus, event instances from the source corpora could be added to the training instances from the target corpus to increase the amount of training data.
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These results are conservative, since there are residues that are annotated as part of a helix in the PDB file which seems to be incorrect.
In SLY there are 26 ORFs that are annotated as dnaC.
There are 6,140 genes can be annotated by all four gene annotation systems, suggesting these genes are well studied.
Among the 6 features that were annotated there is no apparent commonality in function or localization (Additional File 2).
Once a text is annotated, is there less desire to work on it by a new crop of readers?
For the proteins that had been published, there designations in the papers were annotated in the parenthesis behind the ChromDB name (SDG7+ or SDG+).
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