Sentence examples for the whole alignment from inspiring English sources

The whole alignment process is verified by calculating the RMSD between aligned and nearest template coordinates.

These cases are largely an expression of comparisons between unaligned sequences; however, in some instances a part of the CDS or NCS aligned well but constituted only a minor fraction of the whole alignment, producing a value below 0.25.

We also studied the whole alignment results for comparison.

The whole alignment X is assumed to be decomposed into K consecutive segments.

The knowledge of even one 3D protein structure in a given sequence alignment provides a powerful means to test the correctness of the whole alignment.

Many techniques are based on sliding window procedures that compare the topology of one segment against neighboring segments or the whole alignment.

In the preliminary studies we inferred trees from different data sets: the whole alignments (as they were in databases) and alignments with exclusion of all the sites containing at least one gap (complete-deletion approach).

If not noted otherwise, identities are reported for the whole alignments i based on truncated alignments Thirty-six (53.7 %) of the reconstructed genes are homologous to previously functionally characterized genes of WSSV (and other organisms in the case of IAP.

This network reconstruction could be achieved by different means, either through the recoding of the PAMs features in a matrix of characters or by realizing a Splitstree analysis (for instance) of the whole alignments of Ty3/Gypsy and Retroviridae sequences.

These alignments were performed using the whole genome alignment software Eland (Illumina), which reports unique alignments of the first 32 bases of each read, allowing up to 2 mismatches.

This difference represents 25% of the non-aligned sequences in the whole genome alignment, although this prophage represents less than 2% of the genome size.