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PINALOG is flexible in allowing the use of sequence only alignment or sequence-function alignment depending on the requirement of the user.
FASTA is used for sequence alignment in 3dRPC.
Authors in [14] discuss GPU implementation of sequence alignment algorithms used in molecular biology.
SeqCentral offers highly-scalable genetic sequence alignment in the cloud.
To improve the quality of the alignments we used multiple sequence alignment instead of pairwise alignment, aligning the sequences in 21,969 groups of 40 sequences.
The use of alignment-free methods for comparing sequences has proved useful in different applications.
We used this "natural" partition of whole-genome multiple sequence alignments in our analyses.
Comparisons of sequencing alignment metrics were made to estimate the potential improvement in FFPE samples.
All of the complete Monkey King sequences were used for multiple sequence alignment using ClustalW in MEGA 5 [ 46].
Alignments of sequences were performed using the BioEdit Sequence alignment Editor [ 20].
Thereafter, the full length of the Sra-til sequence was aligned with the most homologous sequences in the database using CLUSTALW multiple sequence alignment program.
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