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We used phase 1 nucleotides of single-copy genes from different genomes and MCMCTREE from PAML74 to estimate the time divergence time of DBM.
The time divergence estimates for these clades are in Table 1.
An estimate for the time divergence of L. culinaris from L. ervoides and of both from M. truncatula was also calculated.
Due to TN's reliance on an accurate mutation rate a second estimate for the time divergence was calculated (TC) was estimated using calibration points from the best estimates of divergence from fossil record for two nodes in the phylogeny.
The results obtained here reflect the predictions of Pleistocene forest dynamics: the time divergence estimates all fall within this epoch and the estimated historical demography is congruent with refugia.
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Thus, the ability to detect genetic divergence in morphologically distinct populations depends on the time since divergence, the type of genetic markers used and demography.
The time since divergence for the duplicated region is estimated at 1,506 years whereas the time since divergence for the comparable regions ranged from 866 years to 2,131 years.
The inferred timing of migration for the remaining locus was around the time of divergence.
We could also use the molecular clock to estimate the time of divergence of H. naledi to the other hominins.
The time of divergence (with error range shown in parentheses) of BMR and 12 other mammals based on orthologous proteins.
The Beijing team calculates that at the time of divergence there were only 288 Han Chinese and 22,642 Tibetans.
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