Sentence examples for the size of the transcriptome from inspiring English sources

First, the size of the transcriptome did not influence our ability to retrieve candidate toxin genes.

Thus, the assembly of their transcriptomes is not only complicated by their size (almost double the size of the transcriptome of a diploid organism) but also by the high sequence identity between homeologous copies.

The BLASTx parameters used must therefore be a tradeoff between the size of the transcriptome that can be annotated by using a divergent GRS, and the level of error accepted.

Comparison of accuracy metrics between assemblies should be done with care, however, as even though the P. taeda transcriptome showed a lower accuracy (57 %) than P. patula, the size of the transcriptome means that it still contains ca. 10 000 more accurately assembled sequences.

The MAS 5.0 based present calls representing the size of the transcriptomes (15,465 - 18,090) examined, was found to be significantly higher in comparison to a recent sequencing-by-synthesis based analysis of rice anther transcriptomes in which about 3000 - 12000 distinct transcripts were detected in individual stages of anther development [ 37].

Notably, the sizes of the transcriptome differ significantly between the two conditions: the total copy number of mRNA under the poor condition is approximately half of that under the rich condition, largely because of a drastic decrease in a group of the most abundant mRNAs encoding ribosomal proteins.

With this approach, we obtained seven independent estimates of the size of the tetraploid transcriptome relative to each diploid progenitor transcriptome and to the diploid midparent transcriptome (fig. 3 A ; supplementary table S3, Supplementary Material online).

To estimate the size of the tetraploid transcriptome relative to each diploid transcriptome, we then divided the per cell expression ratios from the quantitative polymerase chain reaction (qPCR) assay by the per transcriptome expression ratios from the RNA-Seq data set (fig. 1).

Based on the SE associated with our estimate of transcriptome size (±0.1), a 95% confidence interval (CI) for the size of the T2 transcriptome relative to the midparent value is approximately 1.2- to 1.6-fold (1.4 ± 1.96 × SE).

The size of the assembled transcriptome was 160.27 Mb in C. tribblei and 142.14 Mb in C. lenavati.

Owing to the establishment of other specialized databases, we can resolve this problem, at least the size of the human transcriptome.