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Fig. 4 Possible restarts of the sequence of states.
In this case we are trying to find the sequence of states with maximum likelihood.
By maintaining back-pointers the sequence of states can be traced back through.
Therefore, the sequence of tokens generated by an HMM gives some information about the sequence of states.
An HMM classifier models a sequence of symbols from observed data without knowing the sequence of states it has to follow to generate these observations [13].
The state diagram used in the sequential machines is a directed graph that allow us to visualize the sequence of states.
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In case of permanent fault shown in Fig. 3(c), the sequence of state transition is ①-②-③-④-③-④-③-⑤.
and the sequence of state transitions (e.g., feed- forward loops described in detail later).
In other words, the exact amount of physical quantities can be neglected as long as the state of entities and the sequence of state transitions are correct in logical models.
Both negative and positive autoregulations are identical to simple regulation in logical domain because only the state of entities and the sequence of state transitions are considered, neglecting all the physical details such as the response time and cell-cell variation (Fig. 3A).
Left eigenvectors provides the lumping (several species cumulated to form pseudospecies) and right eigenvectors provide the sequence of state transitions.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com