Sentence examples for the secondary alignment from inspiring English sources

Thus, the secondary alignment of ENSTGUG00000013021 on chr3 appears to identify the true zebra finch ortholog of KCNK16.

For contigs with multiple significant alignments, an F-test is used to further filter out secondary alignments by comparing the ratio of the best alignment's chi-square score to that of each the secondary alignment.

Manual inspection of selected SIM4 alignments showed apparent sequence inconsistencies, when compared to the secondary alignments [see Additional File 1].

However, these secondary alignment hits were of much lower quality (i.e. BLAST score) and were therefore not considered for further analysis.

Support values for each node of the phylogenetic tree from the gapless secondary alignment was provided by the approximate likelihood-ratio test for branches [ 32] and the test, based on multiple comparisons of log-likelihoods elaborated by Shimodaira and Hasegava [ 33].

None of the lenses required secondary alignment.

Virtually all of these secondary alignments were to chromosome unknown (chrUn).

The target-template alignment generated by MODELLER agreed with the secondary structure alignment (Supplementary Fig. S1A).

Structural superpositioning was accomplished using the secondary structure alignment approach and the program SSM Superimpose.

The secondary structure alignment was made employing the method described by Kjer [ 42], except for employing the program BioEdit 7.0.9 [ 43] for sequence editing.

Next, we aligned the mRNA sequence derived from the protein coding region for each Ensembl gene model to the mRNA sequence derived from the secondary genomic alignment (i.e. the allelic variant).