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Four major algorithms exist to solve Eq. 2. The first and the second involve matrix representations, either using singular value decomposition (SVD) (Kabsch 1976; Kabsch 1978; Arun et al. 1987), also known as Kabsch algorithm, or using eigensystems of orthonomal matrices (Horn et al., 1988).
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The first involves binding to other compounds, while the second involves cleavage (Hahn et al. 2014).
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