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The other half of the sample was retained as an unexposed control.
Nevertheless, the sample was retained because the pattern corresponded to the modelled differentiation of the population at South Orkney Islands.
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As the entire system is self-contained and the sample is retained in the corer, it was found ideal for extracting very soft sediments which could not be captured by existing corers.
The apparatus comprises a stirred sample chamber in which the sample is retained by a BS150 mesh screen (0.106 mm), and a series of jacketed cups containing the medium (80 ml) which are raised and lowered in turn over the fixed sample chamber for specified periods.
Accordingly, when O-mannans have been analyzed by TLC part of the sample is retained at the origin [4,13,28].
When it was reported, retention was good, with 46%to80%0% of the sample being retained between waves; however, only 24% of the articles reported this statistic.
After preprocessing each sample separately using the simpleaffy implementation of MAS5, only probes with a present call in 80% of the samples were retained [ 22].
All the samples were retained, as none had more than 75% of the probes with a detection p-value greater than 1e-05.
Variants in positions with a minimum coverage of 20 reads and a strand bias less than −100 in each of the samples were retained for further analysis.
Genes whose expression differed by at least 1.5-fold from the median in at least 20% of the samples were retained, genes not meeting this criteria were excluded due to low variability across the samples.
Capture probes that were flagged (that is, did not pass Agilent's 'well above background' condition) on at least 80% of the chips were removed prior to data analysis, such that only those capture probes with a raw signal greater than 99% of the background population signal, for at least 20% of the samples, were retained (29,333 probes were discarded).
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