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Schematically, two levels of influence on transferability were described [ 25] : indirect (outcomes are not transferable because the terms and conditions for implementing the intervention are different) or direct (for the same implementation modalities, different outcomes are obtained) (i.e. Table 2).
Because alignment quality and (in particular) local alignment coverage are strongly affected by parameterization, in order to isolate the algorithm's effect, we used the same profile SCFGs as parameterized by the same implementation (Infernal), and compared Infernal's default subtree alignment method versus its newly implemented trCYK option.
Overall, the best combination of optimizations gives a mean speedup of 168 times over the same implementation without the optimizations.
By using message passing, the same implementation can be used on both large SMP machines and clusters of workstations.
Overall, the best combination of optimizations gives a mean speedup of 4.11 times compared to the same implementation without the optimizations.
The implementation is verified against experimental data and an equivalent finite element model that utilizes the same implementation of the crack band theory.
Similar(29)
In this section, we specify the model parameterization and the methods we used for the model studies presented in Section 4. The same implementations are planned to be used to analyse actual data of the Swarm satellite mission.
This generality was evidently useful in obviating a clear relation between the pairwise pocket dissimilarity patterns and the corresponding pairwise ligand patterns, which were generated by the exact same implementation.
This helped reusing the same kdtree implementation recursively.
Later, the same computational implementation is recast as a new method called "finite volume direct averaging micromechanics" (FVDAM), starting by Bansal and Pindera (2006).
Many details still have to be fleshed out in discussions over the next few months, and sounding a note of caution, Mr. Blair said, "Obviously, agreement to all this is not the same as implementation".
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