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The DNNs reported in this section were all initialized from scratch and were trained based on the same alignments provided by the LDA+MLLT GMM system.
From the same alignments, we generated 100 calibrated pHMMs using hmmbuild/ hmmcalibrate.
That is, the same alignments were used but the information was pruned according to Figure 2a.
The same alignments were used in each case, in PSICOV format for PSICOV and FreeContact and A3M format for CCMpred.
From the same alignments we built a conservative HMM database containing 18 profiles (Additional file 1, Table S1).
Using the same alignments, we also reconstructed the phylogeny using MrBayes 3.2 (Ronquist et al. 2012, Jones model).
Similar(37)
Overlap and first order moment similarity indices in momentum space are computed for the same alignment.
Torre is likely to stick with the same alignment to begin the A.L.C.S., with Knoblauch at designated hitter and Luis Sojo at second base.
Many millions of iron atoms spontaneously locked into the same alignment to form a ferromagnetic domain also constitute a magnetic dipole.
That allows the planets to return to about the same alignment with the Sun they had been in eight years earlier, after which they go out of sync for more than a century.
The survey suggests that the henge was on the same alignment as Stonehenge, and comprised a segmented ditch with north-east and south-west entrances, enclosing internal pits up to a metre in diameter believed to have held massive timbers.
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Since I tried Ludwig back in 2017, I have been constantly using it in both editing and translation. Ever since, I suggest it to my translators at ProSciEditing.

Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com