Exact(2)
For each array, array outliers measure the percent of probe sets with expression patterns that are inconsistent from the rest of the arrays.
In exploratory analysis, we applied Partek's single-level cross-validation method (Partek® software, Partek Inc., St . Louis MO) using a portion of the samples in each group as training dataset to generate a candidate signature gene list, and tested them on the rest of the arrays as the testing dataset to evaluate if the gene list would correctly identify array's group.
Similar(58)
The rest of the array and a titanium case enclosing other electronic parts are stitched in place at the back of the eye, where they can't be seen.
Second, the average nucleotide pairwise identity of the first and last Aar_ AcSp1 repeats to the rest of the array is slightly lower at 96%and93%3%, respectively.
GO Terms that were over- or underrepresented in the genes modulated differentially in parthenocarpic fruit set (eTIME RP75/59 and eRP75/59vsUC82) with respect to the rest of the array.
GO Terms that were over- or under- represented in the genes modulated during normal carpel development and fruit set (TIME), with respect to the rest of the array.
However, only weak autocorrelation signals with no periodic peaks were observed when up to eight dispersed subarray blocks deviated from the rest of the array.
We also extracted the GO terms that were over- or underrepresented in the differentially expressed genes associated with the variables eTIME RP75/59 and eRP75/59vsUC82 with respect to the rest of the array using the Fatigo program (Table 3).
Using the FatiGO program [ 30] we extracted the terms that were over- or underrepresented in the differentially expressed genes associated with the variable TIME with respect to the rest of the array (Table 2).
The results shown in Additional file 3a indicate that there is similar distribution of T-DMRs in the tiling regions in CpGi and non-CpGi promoter regions as in the rest of the array-covered genome.
Using the fatiGO program [ 32], we extracted the terms that were found to be enriched among the DEGs associated with each transition with respect to the rest of the array.
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