Sentence examples for the respective alignments from inspiring English sources

For a sample of 50 genes given in Table 3 the presence of recombination in the respective alignments was also manually confirmed using RDP3 [63].

Missing sequences for certain taxa in certain partitions were coded as missing data in the respective alignments.

In multiple analysis, trees are inferred separately from the respective alignments and only relationships that are well supported in all (or most) of the trees are accepted.

Here, trees are inferred separately from the respective alignments and only relationships appearing in all (or most) of the trees are accepted (see also [ 34]).

The tree for Proteobacteria was calculated using the JTT amino acid model [ 44] (-m PROTMIXJTT) and the tree for Bacteria using the WAG model [ 45] (-m PROTMIXWAG), as these models gave the best likelihood scores for a given maximum-parsimony tree of the respective alignments.

The nuclear genes contained many indels within coding regions, so following the removal of introns, the exon regions were aligned against the respective alignment of amino acid sequences using ClustalW as implemented in DAMBE 4.2.13 [ 71].

However, a glutamate occurs with same frequency at the respective alignment position in the SP family.

Sequence similarity plots are displayed in the LC Bs and the height of the sequence identity plot reflects the average column entropy for the region of the respective alignment.

To prevent loss of 16S pyrotags from the respective alignment schemes, we utilize a merge tool available at http://acai.igb.uiuc.edu/bio/ to merge aligned sequences from both NAST and RDP Infernal into one alignment file.

Changes in the repeat unit patterns are given below the respective alignment.

The memory footprint reduction that can be achieved is roughly proportional to the gappyness of the respective alignment.