Sentence examples for the reference panel from inspiring English sources

The 221 filtered sequenced accessions passing quality control were used as the reference panel.

To construct the reference panel, we excluded structural variants and considered only SNPs with at least 90% information.

SNP positions in the 221 accessions of the reference panel were inserted by: dbmeister.py --db my_database.db --snp_pos my_snp_pos_file.

The reference panel used for imputation comprised of 90 known JPT + CHB haplotypes from the International HapMap Project data (Phase II Public Release #22 NCBI Build 36).

Phasing was performed with SHAPEIT2 (v2) and imputation was performed with Impute2 (v2.3) using the 1000 Genomes integrated variant data set version 3 as the reference panel.

It should however be stressed that the quality of the imputation depends strongly on the reference panel and that especially rare variants can be difficult to impute39.

The high Tg thermoplastic tougheners yield considerable improvements of the composites mechanical properties, especially the interlaminar fracture toughness, as compared to the reference panel.

We conclude that the imputation accuracy of rare variants increases with higher density of genome-wide genotyping arrays when the size of the reference panel is small.

Then, the reference panel judgments were compared to evidence-based LRs.

The calculation of the scores based on the judgments of the reference panel is explained elsewhere [16].

Linkage disequilibrium patterns observed in the reference panel are then used to infer the likely genotype at the untyped SNPs in the study sample.