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The sequenced reads are then mapped to the reference genome.
The reference genome is Nipponbare (MSU 7.0).
Sequence data were aligned to the reference genome, NC_001320.
Then, SEAL API align reads to the reference genome.
The reference genome is a mosaic of DNA data from volunteers put together by the National Institutes of Health.
Index of the reference genome was built using Bowtie v2.0.6 and paired-end clean reads were aligned to the reference genome using TopHat v2.0.9.
The RNA-seq raw data was aligned to the reference genome (hg19) (Trapnell et al., 2009).
Obtained reads were aligned to the reference genome of Termitomyces sp. J132 for haplotype reconstruction.
RNA-seq data were mapped to the reference genome (hg38) by using Bowtie/TopHat.
In the third iteration, we map streams onto the reference genome.
Algorithm 3 describes the process of mapping stream of reads on the reference genome.
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