Sentence examples for the read are from inspiring English sources

The remaining bases of the read are then compared base-by-base to the reference.

An optimal read requires that no more than 1% of the SNP sites covered by the read are mismatches.

In other words, the position of each read on the target genome, and thus positions of sequencing errors on the read are also present in the dataset.

Step 5: A DER is determined by a strict criterion to minimize false positives and is defined as when all constituent k-mers in the read are DEKs (obtained from Step 3).

To do this, we estimate whether the forward read r or its reverse complement rc(r) will produce a smaller encoding by counting the number of times adjacent kmers in the read are both present in the reference for both r and rc(r).

After indexing, for every read being mapped, two seeds (namely A and B, by which the name of this tool was derived) with each at length k from each end of the read are retrieved and extended toward each other through alignment by steps as illustrated in Figure 1.

The thought process is fine, but the read is wrong.

bOnly part of the read was included in the assembly.

The second piece of the read is then matched downstream.

Otherwise, the read is misaligned.

The read was only excluded if the length of reads was 17 bases after the trimming.