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The purpose of alignment is to best determine sequence homology.
A maximum of two mismatches was permitted for the purpose of alignment.
The table 2 of the Pei et al. study showed the diversities of the 16S rRNA genes after masking (for the purpose of alignment) and the diversities of the masked hypervariable regions, whereas our study showed the diversities of full-length 16S rRNA genes for the purpose of HGT study.
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As the order of the gene islands from the downloaded CM0113 sequence did not match that of M. truncatula and white clover, they were rearranged for the purposes of alignment.
With the existence of reference alignments specifically compiled for the purpose of RNA alignment benchmarks, program parameters can be specifically optimized for RNA alignments.
Hence, the purpose of the alignment is to make the curvelet coefficients of two images comparable as much as possible.
The position of each printhead can be independently controlled for the purpose of printhead alignment, by which print quality is improved without tightening the manufacturing tolerances.
A reference database comprising a unique set of RAD loci was created for the purpose of sequence alignment and identification of polymorphisms across individuals.
For the purpose of visualization, alignment columns were colored using Jalview [ 23], with the ClustalX coloring conventions [ 24] and conservation color increment set at 10. Profile-against-profile searches were performed using the HHPred method [ 25].
However, the purpose of the alignment-based network comparison problem is very different from the purpose of the alignment-free methods (Section 1).
The accuracy of alignment is very important in re-sequencing because the main purpose of alignment is to discover the variants relative to a reference genome.
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