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Even if the contribution on C2-pyridine is about 50% less than C3-pyridine, the preferred interaction site remains C2-pyridine.
Therefore, the data from Mulliken atomic charge profile, % contribution on HOMO, and total energies are in favor of C2-pyridine as the preferred interaction site for quinoline.
This observation is consistent with the preferred interaction of HU with distorted DNA structures rather than sequences [15], [19].
Thus, the ParE-E437C (GyrB-E466C) substitution appears to have little effect on the preferred interaction of the C-7 group of moxifloxacin.
The graph showing the statistical potential in Figure 1B depicts the preferred interaction geometries for direct contacts and solvated Mg2+ ions.
In order to further investigate the preferred interaction partners when all three families of proteins are present, we devised a bridged split YFP assay.
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Together, the database and software applications are useful to gather information that can be further analyzed in order to obtain insights into the preferred interactions of heteroatom groups in proteins, study their binding mode, design novel molecules or to annotate protein function.
Since, the loose packing spheres were reported for the blending system of PS90k homopolymer with PS133k-b-P2VP132k [34], it is reasonable to state that the PS3.5k homopolymer in PSVP probably locates in the PS phase due to the preferred interactions (as illustrated in Fig. 1).
We show that modeling interactions between adjacent nucleosomes significantly improves nucleosome occupancy predictions in an in vitro system consisting of purified histones assembled on naked yeast genomic DNA, demonstrating that the preferred interactions that we find are intrinsic to nucleosome-DNA associations.
In contrast, exchange of phenylalanine to glycine on one hand enhances the association to phosphatidylcholine and changes the specificity of the protein from preferred interaction with phosphatidylglycerol to preferred interaction with galactolipids (Fig 1B; 2C, D; 3A, D).
Before developing a new speech dialog system (SDS) in a new domain developers have to examine the user's preferred interaction style and its influence on driving safety.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com