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Therefore, the predicted dataset is embedded into 3D space, based on the same features that have been employed for (Q SAR modeling.
Another approach for model independent visualization of classification results uses a 2D projection of the predicted dataset with self-organizing maps (SOMs) [29].
It is important to point out that our findings regarding the second methionine are true and more statistically significant for proteins from the predicted dataset of dual targeted proteins.
Perhaps because of the unavailability of suitable detection and analytical methods, currently the datasets for DSCO pairs, including the largest literature-based dataset by [2] (33 pairs) and the predicted dataset with experimental verifications by [37] (7 pairs), are very small.
This observation was more noticeable for the predicted dataset.
In the predicted dataset, the fraction of tyrosine residues was much higher (25.0%) compared to the experimental set (8.6%).
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Although it is very likely that our predictions are highly reliable we separated the evidenced from the predicted datasets within the front-end and now provide two sub-versions of CoryneRegNet.
The predicted datasets covers tube diameter (D) range 2 mm < D < 8 mm, a wide range of mass fluxes, heat fluxes and working fluids.
These sequences certainly do not represent a comprehensive or uniform sample of the T. gondii proteome and thus, no assumptions can be made about the quality of the sequences or coverage of the proteome by this dataset with respect to the predicted datasets.
To identify the transcripts present in Hydra-bo but absent from the two sets of genome-predicted sequences, we aligned the Hydra-bo sequences to a pooled version of the predicted datasets.
We then performed the same comparisons after limiting the predicted datasets to pairs of proteins in which neither protein was present within the training data or the proteins used to calculate domain-pair odds.
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