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In order to run an exhaustive motif discovery algorithm, the only component missing is an efficient way to count the number of occurrences of a generalized string in a set of sequences S. To this end, we walk an annotated suffix tree of S, as introduced by Sagot (1998).
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The only thing missing is the honking.
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Since I tried Ludwig back in 2017, I have been constantly using it in both editing and translation. Ever since, I suggest it to my translators at ProSciEditing.

Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com