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Our resulting modified genomes have several times more unique restriction sites and reduce the maximum gap between adjacent sites by three to nine-fold.
The maximum gap between them is about 317 s.
This setup naturally leads to the problem of clustering, which in its simplest form reduces to the problem of identifying the maximum gap between the means, and I will also discuss algorithms for adaptive clustering.
We now calculate the maximum gap between the outer bound, given in (33), and the achievable rate-region, given by (30).
The implementation of PPHT imposes three parameters: (1) a threshold, indicating the minimum number of points in a bin, in the line parameter space, in order to consider that the line is represented by a sufficient number of points, (2) the minimum length of a line segment, and (3) the maximum gap between line segments lying on the same axis.
To ensure that locally low SNP density does not increase the length of an ROH, a required minimum density was set at 50 kb/SNP and the maximum gap between two consecutive SNPs in a tract was set at 100 kb.
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In all searches, the maximum overlap between a predicted locus and an annotated ORF was set at 65 and the maximum gap allowed between the 3' end of a region of conservation and the 5' end of a predicted Rho-independent terminator was 35 bp.
The minimum required density was one SNP per 500 kb and the maximum gap allowed between any two consecutive SNPs was 1000 kb.
The maximum gap size allowed between a pair of sequence is 5%.
As the maximum gap sizes for joining contigs increases more switch errors are likely to occur and the difference between the two error rates can be used to identify an appropriate maximum gap length.
Orthologous genes defined by CDS alignment were grouped into synteny groups using DRIMM-Synteny or Cynteny (both tools providing similar results) with the following "cleaning" parameters: minimum number of genes in synteny blocks (>5), maximum gap between two synteny blocks (100 kb), and minimum length of synteny blocks (100 500 kb).
More suggestions(11)
the maximum coherence between
the maximum time between
the maximum force between
the maximum error between
the maximum correlation between
the maximum exchange between
the maximum deviation between
the maximum exposure between
the maximum distance between
the maximum difference between
the increased gap between
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