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One of the summaries is an automated MalaCards-generated summary, highlighting the main annotations in the specific card.
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To make sure that during the annotation process the amount of missed chemical mentions was marginal, in addition to the main annotation team that prepared the CHEMDNER corpus, a second group of additional curators annotated the test set abstracts.
The resulting MAKER-P gene models were post-processed to exclude from the main annotation files gene models with relatively poor support (annotation evidence distance scores of ≥0.75) or with significant BLASTN64 homology to identified mobile elements (HSP (high-scoring segment pair) coverage over ≥50% of the transcript sequence at ≥80% identity and e value ≤1 × 10−10).
However, they can be mutually exchanged for a single annotation, or to be more precise an embedded note can be easily converted to a note or vice-versa. is an annotations that is bound to a specific timeframe within the video content, however it is only displayed inside the main annotation viewer control.
MAKER (v.2.28) [ 71] was used as the main annotation pipeline for gene prediction and annotation.
The main annotation is output to a tab-delimited text file.
The main annotation categories in PhosphoGRID were assigned as follows: Evidence for in vivo phosphorylation.
The main annotation functionality is performed locally and does not require an active internet connection.
SNP identification was accomplished through a separate procedure from the main annotation pipeline, consisting of the following steps.
The other database uses the GMOD Chado schema and is used as the main annotation database for the CPGR analysis and web display.
For P. sojae EST datasets, cluster statistics and details of the sequence distribution in EST clusters are listed with proper links to the main annotation pages.
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