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From this table, the proposed system exhibits the lowest alignment error than other systems.
Each ORF was translated and searched against the Protein Data Bank (PDB) [ 55] using the PSI-BLAST algorithm [ 56] and then paired with the structural chain with the lowest alignment E-value.
For a node A i in the template DAG, the amount of free columns f i to the right of it is defined as the difference between its alignment position and the lowest alignment position of its immediate successor nodes minus one.
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According to the low alignment precision of strapdown inertial measurement unit (SIMU), this paper puts forward a kind of method, which uses external information with UKF technology to improve alignment precision.
Contrarily, the absence of both rapidly changing convection vortices and turbulent convection at 20 °C revealed by simulation work suggests the deficiency of SWCNT transfer between different areas, and thus results in the low alignment desity.
These sequences are rarely annotated due to the low alignment scores they produce.
We focused on these subsets because of the low alignment rate on relatively short sequences, as reported in Figure 3.
The low alignment rates of Bowtie1 means that methods have available only a tiny fraction of the useful data, leading to less accurate results.
Finally, AlignMiner automatically analyses the MSA to determine the region where the algorithm is going to be applicable: there is usually a high proportion of gaps at each MSA end that would lead to misleading results for frequencies (see below), due to the small number of sequences and the low alignment reliability at these positions [ 1].
To filter out the inflation from the random hits of hypothetical peptides we used two of their unique alignment behaviors, namely, their very low per-peptide hits (which ranges predominantly from 0 to 10 (Additional file 1: Figure S43 45)) and the low alignment-identity profiles from their best hits (median identity value of peptides from Test case 2 was ~55 % (Fig. 4)).
If there were any large discrepancies (i.e., <80% alignment using ΔSUV), we further investigated the reason for this low alignment percentage.
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