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We finalized the list of deletions of genes related to disease susceptibility by verifying that the updated deletion boundaries still overlapped with gene exons.
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Considering the lists of deletions and (small) insertions together in conjunction with each other, we resolve their final SV identities as novel deletions, novel insertions, duplications, and translocations.
OptKnock is used to evaluate the results by using the list of gene deletions from the BHFBA.
The z scores based on the list of overlapping deletions and of overlapping duplications derived from patients' CNVs were calculated, using the same formula (1) that was applied to the randomized lists.
We also acquired the list of inversions and deletions for G.soja.
Eight of the 11 loci in the 'transmitted' list of hotspots were also in the list of non-transmitted deletion hotspots, and only one locus (chr16p13.2) with no transmitted deletions was represented on the non-transmitted list of hotspots (Table 1).
Figure 6A shows the list of commonly found gene deletions for different approaches and their frequency.
Pathway analysis with the list of proteins whose gene deletion causes sensitivity and resistance to nickel identified a wide range of cellular processes engaged in the toxicity of S. cerevisiae to NiSO4.
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The US delegation says it was raising its objections informally at meetings to discuss the draft, and was forced to circulate its blunt list of deletions and additions only after those objections were ignored.
However, this deletion series contains many newly generated kanMX6 deletions, expanding the list of nonessential S. pombe genes and genome-wide tools available for large-scale screens.
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