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The validation, thus, consisted of checking if the pathways that were ranked at the top of the list correspond to native pathways.
As the CREB ChIP-chip DNA microarray covered approximately 8,000 fewer number of promoters, the Top 1% and Top 5% of the list correspond to 182 and 898 promoters [ 29], respectively, which were then used for the comparison (Table 2).
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The list corresponds to the highest value of the correlation parameter μ.
By doing so, we can consider two interesting subsets of F: the right part of the list corresponds to the subset of solutions that have a chance of being dominated by s, while the left part of the list contains the solutions that have a chance of dominating s.
The lists correspond to the collection of differentially expressed genes under specific conditions.
Not all reported pockets usually correspond to true binding sites, but it is expected that entries at the top of the ordered list correspond to regions with the highest probability of being a true binding site.
Nearly 40% of the genes in this list corresponded to human orthologs of mouse bimodal genes that were annotated in our previous study [ 1].
Given a certificate in the form of a list of edges, it can easily be verified in polynomial time whether that list corresponds to a set of edges that are at a distance of or more from each other and have a total weight of or not.
2 This list corresponds to all essential genes for growth on glucose, which also revealed to be essential for growth on any of the other carbon sources.
The common names for the organisms listed correspond to the following scientific names: alligator corresponds to Alligator mississippiensis, opossum to Didelphis virginiana, stork to Ciconia ciconia, donkey to Equus asinus, turtle to Chelonia mydas, starfish to Asterina pectinifera, doorsnail to Albinaria caerulia, fruit fly to Drosophila melanogaster.
By comparing the list of ATF4 target genes based on the published ChIP-seq analysis with the list of genes obtained in this work (165 genes, Supplementary Tables S1 and S2), we found that all six aminoacyl-tRNA synthetases and six of seven transmembrane amino acid transporters from our gene list correspond to the known ATF4 target genes.
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