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This shallow rooting pattern increases the likelihood of tree falls during storms, despite the support that many trees receive from flangelike plank buttresses growing radially outward from their trunk bases.
Spatial position strongly affects the likelihood of tree mortality.
Past scarring, possibly during earlier harvest operations, can also provide indications of possible trunk rot and thus the likelihood of tree fall (Matlack et al. 1993).
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Other Asian countries that have gone from deforestation to afforestation include South Korea and Vietnam.The researchers argue that the trend is partly the result of social changes that occur as countries develop and become wealthier, such as the movement of rural dwellers to cities. Urbanisation decreases the likelihood of trees being felled for heating and building.
The likelihoods of tree topologies produced by the two methods produced distributions that overlapped almost entirely.
We checked that enforcing a clock did not significantly reduce the likelihood of the tree by comparing the likelihoods of a tree with and without a clock enforced using a likelihood ratio test.
These suffice to compute the likelihood of the tree [5]: for example, the likelihood of the tree (A,B, C,D)) is <img src="http://journals.plos.org/plosone/article/asset?id=info?doi/10.1371/journal.pone.0009490.e104.PNG" class= inline-graphic"/> where AB and CD are posterior distributions.
The number of times a tree is sampled is dependent on the likelihood of the tree, thus the PP value of a particular arrangement can be an estimate of confidence in that arrangement.
The likelihood of a tree under the multiple HMM can only be easily calculated when we augment the tree with additional data known as extended alignments.
Tree topologies obtained with the CC model differ from their LG counterparts for most cases: CC influences the likelihood of the tree, its length and also the shape.
The program determines the likelihood of gene trees in a given species tree to find the most likely containing species tree for multiple genes sampled from individuals across a set of closely related species.
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