Sentence examples for the length of database from inspiring English sources

In each case the results were sorted on percent identity rather than e-value since the latter value can be biased by random differences in the length of database sequences.

Notably, D s stores all characters of each database sequence; D l stores the length of each database sequence in D s ; D e stores the start position of each database sequence in D s.

However, the time complexity of the algorithm is O NM), where N is the length of the database sequence and M is the length of the query sequence.

The time complexity of RSEARCH is O NM), where N is the length of the database sequence and M is the length of the query sequence [ 1, 26].

In general the number of differences can be obtained by filling in the dynamic programming table with n rows and m columns, where m is the length of the database string ([8] pp. 224 225).

Accordingly, for E-value calculations, TBLASTN assumes the length of a database sequence to be the length of the protein yielded by translation in a single reading frame, even though translation is in fact performed in all six reading frames.

ORFs that had more than 90% protein identity and more than 80% of the length of the database match and did not contain frameshifts or premature stop codons were classified as intact ORFs.

The ISAmapped and SAP indices used by the search step occupy 8m+4n bytes of disk space, where n is the total length of database sequences and m is the total length of query sequences.

Besides, it has been shown experimentally that the use of more recent GPU processor like NVIDIA-GPU Quadro FX 770M can perform the recognition of 4 frame per second with the same length of database.

In order to obtain the E-values comparable among different genome sizes, the "effective length of database" was set to 500,000,000 (using -z option).

Owing to that the size limitation of local memory is 16 KB per-thread and the maximum length of database sequence is 2,000.