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It is crucial to efficiently select the interactions containing B-mesons.
Location was considered as random effect and hence, all the interactions containing this factor are random [ 17].
We process as follows: first, we selected only the interactions containing one or two fragments containing the genomic element (centromere, telomeres, early origins of replication [ 25] or tRNA) instead of taking all detected interactions.
To assign some functional information to hypothetical and unknown proteins of M. loti, we examine all the interactions containing these proteins and characterized them based on their interactions with partners of known function.
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The interactions contained in this data set are of evolutionarily conserved proteins and pathways.
However, crystal structures are assembled by the interplay of a number of forces and thus these methods compare only a subset of the interactions contained within crystal structures.
In an effort to reduce the complexity of the interactions contained in the network modules we constructed consensus networks based on the most abundant HLA proteins for each risk group and only included partners outside the HLA with a stringent criteria (see Methods).
Then, we determine the known interactions by a comparison of inferred TF - gene interactions to the interactions contained within RegulonDB.
There are 32% of the g↔e′ interactions containing single-charged amino acids.
Furthermore, there are 37.8 % of the g↔ e' interactions containing single-charged amino acids in tomato SlbZIPs, which is higher than that in maize bZIPs (32%%) [ 12].
Interactions containing the cognate canonical site type (offset 6mer, 6mer, 7mer-m8, 7mer-A1, or 8mer) were removed.
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