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Representing transcription factor binding specificities in this form means that no data is stored on the interaction of binding specificity between different base positions in the binding sites.
In addition, one can speculate that the PADs' calcium dependency may be altered by specific PTMs or via the interaction of binding proteins.
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The extended vs the more compact conformation of the tandem tudor domains would place the binding partners of individual tudor units at different geometric arrangements, constraining the interactions of binding partners with the tudor domain proteins, as well as those between themselves and with downstream targets, hence determining the biological properties of the tudor domain proteins.
This is the first report about the interaction of gelatin binding domain of Fn and Lig proteins and provides an example of Lig-gelatin binding domain binding mediating bacterial-host interaction.
The addition of RNase to the binding reaction enhanced the CR3-protein complex, suggesting that removal of the RNA molecules in the extract facilitates the interaction of CR3 binding protein to the CR3 DNA probe.
The inherently weak and low specificity of the interaction of mannose-binding protein with terminal sugars means that biologically significant binding can only occur through multivalent interactions.
The sequence and context of RNA that dictate the interaction of RNA-binding proteins with their targets have tended to be studied on a protein-by-protein basis.
Also, the interaction of Ran-binding protein 2 with P112 regulatory subunit of the 26 S proteasome involves still another protein, a putative kinesin-like protein.
It could instead serve mostly to inhibit the interaction of DNA-binding proteins with the genome [13], [14].
This indicates that adhesion of cells must occur via the interaction of RGD-binding integrins.
The interaction of RNA-binding proteins with 5′- or 3′-untranslated regions (UTRs) of mRNA is the translational control mechanism.
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