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The following parameters should be used: -f for the Hi-C raw file format after reads mapping; -r for the desired resolution of the result; -d for the distance to distinguish short-range and long-range interactions; -c for filtering the interactions below a certain distance "c"; and all parameters necessary for Markov Clustering.

In turn, we also hypothesize that the spreading of an invasive plant could modify the interaction between below- and aboveground mutualists.

The effects of significant markers obtained in the interaction analysis (see below, Association mapping and interaction analysis) were validated in other germplasm arrays of Barley CAP breeding lines.

The mechanistic understanding of how plant functional traits and their mutual interactions affect ecosystem functioning, understanding the role of genetic diversity in ecosystem functioning, and acquiring insights in the interactions between below-ground biodiversity and forest functioning and restoration success, are the most urgent research needs.

Next, the information of the inflows at the manholes is directly used as input to the 1D 1D model to simulate the interaction between the below-ground storm sewer flows and the above-ground street flows (Fig. 6).

Note that for our first analysis of genetic interactions, we only chose synthetic lethal interactions; below, we also analyze a much larger data set of non-lethal genetic interactions.

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As discussed below, the interaction terms between model variables were not significant.

A complete listing of the interaction potentials is provided below; here we present a concise description of our model.