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We included the top 50 discriminative genes in the initial marker set, to keep the maximum number of features identical for all classification methods.
In this study, we included the top 50 pathway markers in the initial marker set, which were selected according to the method in Tian et al. [22] as elaborated in the previous subsection.
An age-related increase in the time constant of the response to the leading marker would increase the degree to which a response to the initial marker masks the response to the lagging marker [17].
Finally, in order to analyze the overall effect of preselecting the initial marker set, we carried out another set of within-dataset experiments, where the initial markers were reselected in every experiment using only the designated training data.
For the gene-based classifier, we included the top 50 gene markers with the lowest
Asterisks denote the individuals used for the initial marker development.
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Approximately 7 10% of the initial markers generated from GBS were anchored to the single maps for each cross.
-Victoria R. "I learned how to use the "Initial Markers" when looking for reliable sources".
The white-tailed deer and mule deer marker panels used in the LD analyses thus consisted of 60 (27.9% of the initial markers screened) and 42 loci (60.0% of the markers typed in white-tailed deer), respectively.
MAPMAKER initially uses a maximum of eight markers, and subsequently positions additional markers within the initial (eight marker) map.
Out of the 368 initial markers, 24 were not useful for the integration because they localised on BAC clones that did not yield useful fingerprints (15 cases) or on singleton clones (9 cases).
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