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2.3 we describe the implemented statistics routines.
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We test all implemented statistics on an artificial data set, somewhat similar to Tompa et al. [20], in order to control all variables.
EGN also implements statistics describing genetic diversity in these samples, for various user-defined thresholds of similarities.
Testing for differential expressed genes was performed using the GeneSpring GX software platform version 11 (Agilent) with the implemented T-test against zero statistics combining biological replicates.
Statistics reported by the implementing NGOs point to a mean monthly coverage of registered beneficiaries with CSB of 54% over the period March 2003 to May 2004, with a mean ration of 111gr per covered beneficiary per day (children and women).
After data normalization we applied the linear modeling approach and the Bayes statistics implemented in the LIMMA package (http://bioinf.wehi.edu.au/limma/, [ 16]) to the biological replicates as described in Materials and Methods.
POTION first tries to calculate q-values using the qvalue method as described in [ 25] and implemented in Statistics:Multtest Perl module, estimating the proportion of true null hypotheses using a bootstrap procedure.
After data pretreatment and normalization, we applied the linear modeling approach and the Bayes statistics implemented in the limma R package [ 20] to our biological replicates as described in the Methods part.
In both cases the survey was approved as part of the national survey implemented by BPS-Statistics Indonesia, the national statistics organization of the Government of Indonesia.
Stephen Peckham, director and professor of health policy at Kent University's centre for health service studies, said: "Water fluoridation was implemented before statistics had been compiled on its safety or effectiveness.
We therefore implemented robust statistics (as an optional feature) by removing a certain percentage of the extreme values before the average is taken.
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