Exact(3)
Next, the BLASTn aligner is used to subtract host reads computationally [ 19, 26], aligning to the human fraction of the NT database at word size 11 and e-value cutoff of 10-5.
It may well be desirable to combine the both and ambiguous fractions with the human fraction to run against the human genome, and also with the mouse fraction to run against the mouse genome.
Instead of running Tophat on all of the reads, having separated the reads according to their origin, we can run it with the human genome just against the human fraction of the reads, and against the mouse genome on the mouse fraction of the reads.
Similar(57)
The human exocrine fraction was obtained from heart-beating cadaveric non-diabetic donors as the discarded fraction from islet cell isolation for the purpose of clinical transplantation in type 1 diabetes patients.
Clusterin, a highly glycosylated protein that is also known as apolipoprotein J, is one of the most abundant proteins in the human MFGM fraction (Table 3).
Current experiments show that selection for expression of specific markers can identify the human tumor fraction that is able to xenograft in immunodeficient mice.
Although some of the compounds displayed at least moderate stability in the human microsomal fraction assay, only the THPP, Adamantyl, and, to a lesser extent, the TAP families showed workable stabilities in the mouse microsomal assay.
The human intake fractions include exposure through inhalation of air, and ingestion of drinking water, leaf crops, root crops, meat, milk, and fish from freshwater and marine aquatic compartments, for the total human population.
Fatrai, S. et al. Mucin1 expression is enriched in the human stem cell fraction of cord blood and is upregulated in majority of the AML cases.
In LNCs co-cultured with the human NPs the fraction of IL-2Rα+ T cells was reduced by 32%, and a similar decrease was observed in the mean fluorescence intensity of IL-2Rα IL-2Rα6B).
Additionally, the human MaSC-enriched fraction was more similar to claudin-low and normal breast-like tumors, suggesting the distinct molecular subtypes may derive from distinct cell types.
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