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In order to examine whether the glucose dependence of genes in V5 affected our data in Additional file 1, we excluded the data points at 13.5 and 5.6 g/L glucose for V5.TM6*P, and 10.5 and 7.4 g/L glucose for V5 (which gave the highest array signals) and compared the cDNA array data in this case with each other exactly as for the full data set.
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Neighboring peaks within 1 kb were collapsed and the highest bound array element was represented in the cluster-grams and used for all further analysis.
To measure DNA methylation, we used the highest density array currently available, the Illumina Infinium HumanMethylation450 BeadChip, which encompasses ∼480,000 CpG probes throughout the genome.
In this section we discuss concordance results with the high-density array (medium-density array results mirrored those of the high-density analysis and are not discussed in detail).
Although removing uninformative SNPs did not reduce predictive ability estimates obtained with a 54 K SNP array, the high density arrays used allowed up to tens of thousands of SNPs to remain in the final model.
To determine whether the outburst was from a supernova — the explosive end of a star — or the galaxy's core, the researchers used the High Sensitivity Array, a global network of telescopes that includes the Very Long Baseline Array, the Arecibo Telescope, the NSF's 100-meter Green Bank Telescope, and the 100-meter EffelsberGermany Telescope in Germany.
This platform enables the high-throughput array based investigation of individual CpGs at a magnitude higher level than the previous array based Golden-Gate assay [ 30].
CNVs from the lower density array had a high concordance with the 2.1M array CNVs (85.1% of deletions and 81.6% of gains were replicated), but since the high-density array detected so many more CNVs the overlap between the experiments is low (0.07 for deletions (variance = 0.0006) and 0.08 for gains (variance = 0.0004)).
The high-density array for chicken recently developed by Affymetrix, i.e. the 600K Affymetrix® Axiom® HD genotyping array [ 2], offers the possibility to use high-density genotype data for genomic selection in laying hens.
The high frequency array transducer has achieved an ultra-broad bandwidth (@-6 dB) of 127.7%.
We have never observed such process at low temperatures of growth and suppose it to be inherent only to the high-temperature array formation mode.
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