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That is, label the input sequence P to the HMM with the height likelihood, Figure 4 Binary hierarchical classifier.
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To do this, the other definition of the likelihood ratio is the height of the normal curve for affected individuals divided by the height of the curve for unaffected individuals, at a given value.
A nexus file of the maximum clade credibility tree, showing median node heights, likelihoods and posterior support values, is provided in Additional file 3. The set of 250 sampled phylogenies used in the analyses is provided in Additional file 4. Overall, Banksia appears to have diversified by a steady accumulation of species rather than a rapid radiation.
It should be emphasized that the relative height of the likelihood ratio values is not taken into account for the elimination of false alarms.
The log-likelihood was estimated as the product of the height of the empirical frequency distribution at the observed value of diversity by the maximum height of the distribution (see BayeSSC website, www.stanford.edu/group/hadlylab/ssc/index.html).html
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